PUBLICATIONS
Pasulka, A.L., Hood, J.F., Wright, M., Michels, D.E. 2023. Flexible and open-source programs for quantitative image analysis in microbial ecology. Frontiers in Marine Science, Aquatic Microbiology, 10. https://doi.org/10.3389/fmars.2023.1052119
Hammond, S.W., Lodolo, L., Hu, S.K., Pasulka, A.L. 2022. The impact of methodology on the characterization of phytoplankton dynamics in a coastal upwelling ecosystem. Environmental Microbiology Reports. 1-10. https://doi.org/10.1111/1758-2229.13116
McLean, K.M, Pasulka, A.L., Bockmon, E.E. 2021. A low-cost, simple and high performing Arduino pH control system for biological applications. HardwareX. e00247. doi: 10.1016/j.ohx.2021.e00247
Michels, D.E., Lomenick, B., Chou, T-F., Sweredoski, M.J., Pasulka, A.L. 2021. Amino acid analog induces stress response in marine Synechococcus. Applied Environmental Microbiology. 87, e00200-21. https://doi.org/10.1128/AEM.00200-21
Pasulka, A.L., Howes, A., Kallet, J., VanderKelen, J., Villars, C. 2021. Visualization of probiotics via epifluorescence microscopy and fluorescence in situ hybridization (FISH). Journal of Microbiological Methods. 128, 106151. https://doi.org/10.1016/j.mimet.2021.106151
Lazcano, C., Boyd, E., Holmes, G., Hewavitharana, S., Pasulka, A.L., Ivors, K. 2021. The rhizosphere microbiome plays a role in the resistance to soil-borne pathogens and nutrient uptake of strawberry cultivars under field conditions. Scientific Reports. 11, 3188. https://doi.org/10.1038/s41598-021-82768-2
Barth, A., Walter, R.K., Robbins, I., Pasulka, A.L. 2020. Seasonal and interannual variability of phytoplankton abundance and community composition on the Central Coast of California. Marine Ecology Progress Series 637:29-43. https://doi.org/10.3354/meps13245
Pasulka, A.L., Hu, S.K., Countway, P.D., Coyne, K.J., Cary, S.C., Heidelberg, K.B., and Caron, D.A. 2019. SSU-rRNA gene sequencing survey of benthic microbial eukaryotes from Guaymas Basin hydrothermal vent. Journal of Eukaryotic Microbiology. 66: 637-653
McVeigh, D., Skarke, A., Dekas, A.E., Borrelli, C., Hong, W.-L., Marlow, J.J., Pasulka, A.L, Jungbluth, S.P., Barco, R.A., Djurhuus, A. 2018. Characterization of benthic biogeochemistry and ecology at three methane seep sites on the Northern U.S. Atlantic margin. Deep Sea Research II. 150: 41-65
Pasulka, A.L., Thamatrakoln, K., Kopf, S.H., Guan, Y., Poulos, B., Moradian, A., Sweredoski, M.J., Hess, S., Sullivan, M.B., Orphan, V.J. 2018. Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods. Environmental Microbiology. 20:671-692
Terrado, R., Pasulka, A.L., Lie, A. A-Y., Orphan, V.J., Heidelberg, K.B., Caron, D.A. 2017. Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte. ISME J. 11:2022-2034
Pasulka, A.L., Goffredi, S.K., Tavormina, P.L., Levin, L.A., Rouse, G., Dawson, K.D., and Orphan, V.J. 2017. Colonial tube-dwelling ciliates influence methane cycling and microbial diversity within methane seep ecosystems. Frontiers in Marine Sciences Aquatic Microbiology. 3:276. doi: 10.3389/fmars.2016.00276
Sweetman, A.K., Thurber, A.R., Smith, C.R., Levin, L.A. Mora, C., Wei, C.L., Gooday, A.J., Jones D.O.B., Rex, M., Yasuhara, M., Ingels, J., Ruhl, H.A., Frieder, C.A.,Danovaro, R., Würzberg, L., Baco, A., Grupe, B., Pasulka, A.L., Meyer, K.M., Dunlop, K.M., Henry, L.A., Roberts. 2017. Major impacts of climate change on deep-sea benthic ecosystems. Elementa Science of the Anthropocene. 5:4. doi: http://doi.org/10.1525/elementa.203
Pasulka, A.L., Levin, L.A., Steele, J.A., Case, D.H., Landry, M.R., and Orphan, V.J. 2016. Microbial eukaryotic distribution and diversity patterns in a deep-sea methane seep ecosystem. Environmental Microbiology. 18:3022-3043. doi: 10.1111/1462-2320.12185
Case, D.H., Pasulka, A.L., Grupe, B., Marlow, J.J., Levin, L.A., and Orphan, V.J. 2015. Methane seep carbonates host distinct, diverse, and dynamic microbial assemblages. mBio. doi: 10.1128/mBio.01348-15
Petroff, A.P., Pasulka, A.L., Soplop, N., Wu, Z.L., and Libchaber, A. 2015. Biophysical basis for convergent evolution of two veil-forming microbes. Royal Society Open Science. 2:150437. doi: 10.1098/rsos.150437
Landry, M.R., Selph, K.E., Decima, M., Gutierrez-Rodriguez, A., Stukel, M.R., Taylor, A.G., and Pasulka, A.L. 2015. Phytoplankton production and grazing balances in the Costa Rica Dome. Journal of Plankton Research. doi: 10.1093/plankt/fbv089
Pasulka, A.L., Samo, T.J., Landry, M.R. 2015. Grazer and viral impacts on microbial growth and mortality in the Southern California Current Ecosystem. Journal of Plankton Research. 37: 320-336
Selph, K.E., Landry, M.R., Taylor, A.G., Gutierrez-Rodriguez, A., Stukel, M.R., Wokuluk, J., and Pasulka, A.L. 2015. Phytoplankton production and taxon-specific growth rates in the Costa Rica Dome. Journal of Plankton Research. doi: 10.1093/plankt/fbv063
Maloney, J.M., Grupe, B.M., Pasulka, A.L., Frieder, C.A., Levin, L.A., Dawson, K., Case, D., and Driscoll, N.W. 2015. Transpressional segment boundaries in strike-slip fault systems offshore southern California: Implications for fluid expulsion and seep habitats. Geophysical Research Letters. doi: 10.1002/2015GL063778
Grupe, B.M., Krach, M.I., Pasulka, A.L., Maloney, J.M., Levin, L.A., Frieder, C.A. 2015. Methane seep ecosystem functions and services from a recently-discovered California seep. Marine Ecology. 36:91-108
Pasulka, A.L., Landry, M.R., Taniguchi, D.A, Taylor, A.G., and Church, M.J. 2013. Temporal dynamics of phytoplankton and heterotrophic protists at Station ALOHA. Deep Sea Research II. 93:44-57
Samo, T.J., Pedler, B.E., Ball, G.I., Pasulka, A.L., Aluwihare, L.I., Azam, F., Goericke, R. and Landry, M.R. 2012. Microbial distribution and activity across a water mass frontal zone in the California Current Ecosystem. Journal of Plankton Research. 38:802-814
Benham, C., A. M. Cawood, G. S. Cook, A. D., P. C. Davison, M. C. Goldstein, A. E. Johnson, T. Konotchick, E. M. Maldonado, A. L. Pasulka, J. C. Prairie, S. M. Moseman, V. Tai, C. A. Tanner, T. Vardi, T. S. Whitty & L. A. Levin. 2008. Marine Metapopulations (Book Review). Marine Ecology. 29:319-320